Generation of accurate, expandable phylogenomic trees with uDance
. We illustrate the setup for Claims 2 and 3. Stitching happens at junction nodes. After removing taxa placed on outgroup branches, other subtrees can be stitched to this subtree without any need for conceptual merge, but simply replacing the connecting nodes.
Determining the backbone size in the simulated HD-100 dataset. ECDF of novelty of query sequences with respect to a backbone tree of= 1000 sequences selected using TreeCluster-max, for more than 95% of the query sequences, the novelty score is less than one. Novelty score is defined as two times the terminal branch length of the query when placed on the true location on the backbone tree. The distribution of number of marker genes per sequence in WoL2 dataset.
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