Systematic discovery of recombinases for efficient integration of large DNA sequences into the human genome - Nature Biotechnology

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Systematic discovery of recombinases for efficient integration of large DNA sequences into the human genome - Nature Biotechnology
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Systematic discovery of recombinases for efficient integration of large DNA sequences into the human genome

for 5 minutes, and media was aspirated. Cells were then resuspended in the same volume of PBS , and the spin-down and aspiration was repeated to wash the cells and remove any IgG from serum. Dynabeads M-280 Protein G were resuspended by vortexing for 30 seconds. Then, 50 ml of blocking buffer was prepared by adding 1 g of biotin-free BSA and 200 μl of 0.5 M pH 8.0 EDTA into DPBS , vacuum filtering with a 0.22-μm filter and then kept on ice.

A library of mCherry amplicons with randomized barcodes after the stop codon was generated by PCR, electroporated into landing pad cells and recovered and sequenced from gDNA. More specifically, to construct the library, primers were designed to amplify the attP-mCherry-pA sequence off of the template plasmids used in previous landing pad assays , and the reverse primer included a randomized 6×N barcode as an extension. This primer was synthesized by IDT using standard mixed bases.

K562 landing pad clonal lines with the associated recombinase were then electroporated with these amplicon donors. In total, 1.2 × 10K562 cells were electroporated in 100 µl of Amaxa solution with either 250 ng or 750 ng of the amplicon donor. Seven days later, the efficiency of mCherry integration was determined by flow cytometry , and then, 1 day later, gDNA extraction was performed from 5 million cells using a Qiagen DNeasy Mini Prep Kit.

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